Finally, I think I should write a instruction of using my code.<\/p>\n
The code is basically divided into two parts. The C++ convertor, which is inherited from Yassid’s ATTPCroot and python analysis code. Between those two, there is also a python script converting the root tree data files into SQLite.<\/p>\n
The convertor and all other pyhton code needs to be installed differently.<\/p>\n
The C++ part of the convertor converts a Raw binary data file to a Root tree file; then you need the python convertor to convert the Root tree file to a SQLite database.<\/p>\n
Installation Requirements:\u00a0 <\/strong>Root>6.xx, Boost, CMake, Linux environment, Python (Anaconda 2.x is recommended)<\/p>\n Installation steps:<\/strong><\/p>\n ### C++ part ###<\/p>\n ### python part ###<\/p>\n How to run:<\/strong><\/p>\n There are two ways of running the program.<\/p>\n <\/p>\n Tested System:<\/strong><\/p>\n Ubuntu 16.04.1 LTS Multiprocess:<\/strong><\/p>\n The C++ code is a single thread and process program, which can be paralleled (multiprocess) through the multi.py<\/p>\n In multi.py, there are three variables need to be changed, all of the variables are RELATIVE DIRECTORY<\/strong><\/p>\n parentPath: the relative directory of the parent folder of the DATA FOLDERS<\/strong>\u00a0of the raw binary<\/p>\n SQLpath: where you want to store all your converted SQLite databases<\/p>\n paths: all the data folders you want to convert<\/p>\n Analysis Part:<\/strong><\/p>\n Ideally, the analysis part of the C++ code should be working, including\u00a0ATHoughTask,\u00a0ATPSATask,\u00a0ATAnalysisTask and\u00a0ATPhiRecoTask. However, it is not commonly used in my analysis work.<\/p>\n What’s different?<\/strong><\/p>\n As mentioned in the ReadMe file, the FairRoot part and the Root TCloneArray, is completely faked. The fake classes only provide basic functions of iterating tasks and storing temporary variables. However, from my observation, all the analysis tasks should be functioning.<\/p>\n Though most of the programs are unfinished works, but they should give good insights of what the data look like.<\/p>\n The most complete program is the VertexAnalyzer, which reconstruct the<\/p>\n Requirements:<\/strong><\/p>\n besides built-in Anaconda packages, you will also need opencv2 and seaborn (mainly for visualizing, when debug option is on)<\/p>\n Tested System:<\/strong><\/p>\n Ubuntu 16.04.1 LTS Running:<\/strong><\/p>\n under the main folder, run for the multi-process mode<\/p>\n or run the jupyter notebook interactive mode<\/p>\n the Multi.py will produce a text file contains a list of ranges for reaction length.<\/p>\n <\/p>\n","protected":false},"excerpt":{"rendered":" Finally, I think I should write a instruction of using my code. The code is basically divided into two parts. The C++ convertor, which is inherited from Yassid’s ATTPCroot and python analysis code. Between those two, there is also a … Continue reading to build:\r\nmkdir build\r\ncd build\r\ncmake ..\r\n<\/span><\/pre>\n### download the Anaconda 2.x https:\/\/www.anaconda.com\/download\/#linux\r\nbash Anaconda-2.x.x-Linux-x86[_64].sh<\/code><\/span><\/pre>\n\n
.\/build\/example <root file name> <Binary file name> ## this convert binary data to root tree file\r\npython tbjcConvertor\/Convertor_sqlite.py <root file name> <SQLite database name> ## this convert the root tree file to SQLite database<\/span><\/pre>\n\n
python mult.py<\/span><\/pre>\n
\nRed Hat Enterprise Linux Server release 7.4 (Maipo)<\/p>\nAnalysis program<\/a> :<\/h2>\n
conda install -c menpo opencv\r\nconda install seaborn<\/span><\/pre>\n
\nRed Hat Enterprise Linux Server release 7.4 (Maipo)<\/p>\npython Multi.py<\/span><\/pre>\njupyter notebook<\/span><\/pre>\n