{"id":30,"date":"2018-05-25T14:35:00","date_gmt":"2018-05-25T18:35:00","guid":{"rendered":"http:\/\/sites.nd.edu\/zartmanlab\/?page_id=30"},"modified":"2025-05-05T16:16:17","modified_gmt":"2025-05-05T20:16:17","slug":"publications","status":"publish","type":"page","link":"https:\/\/sites.nd.edu\/zartmanlab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n

An updated list of publications is also available on Google Scholar<\/a>.<\/p>\n\n\n\n

The list below includes selected conference proceedings, patents and manuscripts available as a preprint. * = co-corresponding author<\/p>\n\n\n\n

62. <\/strong>Gazzo, D.V., Zartman, J.J. (2025). Calcium Imaging in Drosophila<\/em>. In: Gorvin, C.M. (eds) Calcium Signaling. Methods in Molecular Biology, vol 2861. Humana, New York, NY. https:\/\/doi.org\/10.1007\/978-1-0716-4164-4_19<\/a><\/p>\n\n\n\n

61. <\/strong>Tan, S., Zhu, X., Zartman, J. J., Deng, Q. Low-cost Polyethylene Terephthalate Lamination Microfluidics Designs for Multiplexed Zebrafish Imaging. J. Vis. Exp. (211), e67313, doi:10.3791\/67313 (2024).<\/p>\n\n\n\n

60. <\/strong>Shaikh, R., Larson, N.J., Kam, J. et al.<\/em> \u201cOptimal performance objectives in the highly conserved bone morphogenetic protein signaling pathway.\u201d npj Syst Biol Appl<\/em> 10, 103 (2024). https:\/\/doi.org\/10.1038\/s41540-024-00430-9<\/a><\/p>\n\n\n\n

59. <\/strong>Mim, M.S., Kumar, N., Levis, M., Unger, M.F., Miranda, G., Gazzo, D.V., Robinett, T., Zartman, J.J. \u201cPiezo regulates epithelial topology and promotes precision in organ size control\u201d. Cell Reports<\/em>, 39<\/em>(2), 114398. https:\/\/doi.org\/10.1016\/j.celrep.2024<\/a>.114398<\/p>\n\n\n\n

58. <\/strong>Levis M, Sacco F, Velagala V, Ontiveros F, Zartman JJ. \u201cMechanical Compression of Drosophila Embryos Using Rapid Fabrication Microfluidic Devices.\u201d Methods Mol Biol. 2024;2805:153-160. doi: 10.1007\/978-1-0716-3854-5_10. PMID: 39008180.<\/p>\n\n\n\n

57.<\/strong> Gazzo, D.V., Kinzer-Ursem, T.L., Zartman, J.J., \u201cProteins clump: Mechanics and transport during neurodegeneration\u201d (Biophysical Journal, Volume 123, Issue 16, 2024, Pages 2360-2362, ISSN 0006-3495). https:\/\/doi.org\/10.1016\/j.bpj.2024.06.004<\/a>.<\/p>\n\n\n\n

56. <\/strong>Kumar, N., Mim, M.S., Dowling, A., Zartman, J.J.<\/em> \u201cReverse engineering morphogenesis through Bayesian optimization of physics-based models.\u201d npj Syst Biol Appl<\/em> 10<\/strong>, 49 (2024). https:\/\/doi.org\/10.1038\/s41540-024-00375-z<\/a><\/p>\n\n\n\n

55.<\/strong> Preprint: David V. Gazzo, Jeremiah J. Zartman. Calcium Imaging in Drosophila Organs, 26 April 2024, PROTOCOL (Version 1) available at Protocol Exchange <\/em>[https:\/\/doi.org\/10.21203\/rs.3.pex-2630\/v1<\/em>]. <\/p>\n\n\n\n

54<\/strong>. Levis, M.@<\/sup>, Sacco, F., Velagala, V.@<\/sup>, Ontiveros, F., Zartman, J.J.*<\/sup><\/strong> \u201cControlled Mechanical Loading in Developmental Biology Studies Using PETL Microfluidic Devices\u201d (book chapter, Tissue Morphogenesis, 2nd<\/sup> edition, Chapter 11), Methods Molecular Biology, Vol. 2805, Celeste M. Nelson (Eds): Tissue Morphogenesis, May 2024).<\/p>\n\n\n\n

53.<\/strong> Shaikh R, Larson NJ, Hanjaya-Putra D, Zartman JJ<\/strong>, Umulis DM, Li L, Reeves GT. “Optimal Performance Objectives in the Highly Conserved Bone Morphogenetic Protein Signaling Pathway.” In revision and bioRxiv<\/em>. Cold Spring Harbor Laboratory; 2024;2024\u201302. doi<\/strong>: https:\/\/www.biorxiv.org\/content\/10.1101\/2024.02.01.578451<\/a><\/p>\n\n\n\n

52.<\/strong> Kumar, Nilay, Kevin Tsai, Mayesha Sahir Mim, Jennifer Rangel Ambriz, Weitao Chen, Jeremiah J. Zartman*=co-corresponding author<\/sup>,<\/strong> and Mark Alber. “Balancing competing effects of tissue growth and cytoskeletal regulation during Drosophila wing disc development.”  Nat Commun<\/em> 15<\/strong>, 2477 (2024). https:\/\/doi.org\/10.1038\/s41467-024-46698-7<\/a>. <\/p>\n\n\n\n

* Preprint on bioRxiv<\/em> (2022): 2022-09. doi:<\/strong> https:\/\/doi.org\/10.1101\/2022.09.28.509971<\/a><\/p>\n\n\n\n

51.<\/strong> Kumar, Nilay, Alexander Dowling, and Jeremiah J. Zartman<\/strong>. “Reverse engineering morphogenesis through Bayesian optimization of physics-based models.” in press, 2024 in npj Systems Biology and Applications<\/em> <\/p>\n\n\n\n

Preprint: bioRxiv<\/em> (2023): 2023-08. doi:<\/strong> <\/a>https:\/\/doi.org\/10.1101\/2023.08.21.553928<\/a><\/p>\n\n\n\n

Github: https:\/\/github.com\/MulticellularSystemsLab\/ReverseEngineeringMorphogenesis<\/a><\/p>\n\n\n\n

50.<\/strong> Mayesha Sahir Mim, Caroline Knight, Jeremiah J. Zartman.<\/strong> \u201cQuantitative Insights in Tissue Growth and Morphogenesis with Optogenetics.\u201d Phys Biol. 2023 Sep 28;20(6):061001. PMCID: PMC10594237<\/a>.<\/p>\n\n\n\n

49.<\/strong> Kumar, Nilay, Mayesha Sahir Mim, Megan Levis, Maria Unger, Gabriel Miranda, Trent Robinett, and Jeremiah J. Zartman. <\/strong>“Piezo regulates epithelial topology and promotes precision in organ size control.” bioRxiv<\/em> (2023): 2023-08. doi: <\/a>https:\/\/doi.org\/10.1101\/2023.08.16.553584<\/a> <\/a><\/p>\n\n\n\n

48.<\/strong> Vijay Velagala, Dharsan K. Soundarrajan, Maria F. Unger, David Gazzo, Nilay Kumar, Jun Li, Jeremiah Zartman <\/strong>“The multimodal action of G alpha q in coordinating growth and homeostasis in the Drosophila wing imaginal disc.” bioRxiv<\/em> (2023): 2023-01. doi:<\/strong> https:\/\/doi.org\/10.1101\/2023.01.08.523049<\/a><\/p>\n\n\n\n

47. <\/strong>Huizar, F.J. , Kumar, N, Unger, M, Velagala, V,  Wu, Q., Brodskiy, P.A. <\/sup>, Zartman, J.J. <\/strong>“G protein-coupled Receptor Contributions to Wing Growth and Morphogenesis in Drosophila melanogaster.” bioRxiv<\/em> (2022). <\/strong>doi: https:\/\/doi.org\/10.1101\/2022.09.09.506847.<\/p>\n\n\n\n

46<\/strong>. Levis, M. , Hyland, C., Zartman, J.J.  <\/strong>\u201cEngineering distance learning: the promise and challenges of microfluidics.\u201d (Biomedical Engineering Education<\/em>, 2023). https:\/\/doi.org\/10.1007\/s43683-023-00117-3.<\/a><\/p>\n\n\n\n

45<\/strong>. Flores-Flores, Marycruz, Luis Manuel Mu\u00f1oz-Nava, Rafael Rodr\u00edguez-Mu\u00f1oz, Jeremiah Zartman<\/strong>, and Marcos Nahmad. “Vestigial-dependent induction contributes to robust patterning but is not essential for wing-fate recruitment in Drosophila.”  Biol Open<\/em> (2023) 12 (5): bio059908. https:\/\/doi.org\/10.1242\/bio.059908.<\/p>\n\n\n\n

44. <\/strong>Kumar N@, \u03b4<\/sup>, Huizar FJ@, \u03b4<\/sup>,  Farfan-Pira KJ, Soundarrajan DJ, Brodskiy P, Nahmad M, Zartman JJ<\/strong>. MAPPER: A new image analysis pipeline unmasks differential regulation of Drosophila wing features. Frontiers in Genetics<\/em>. Volume 13, Article 869719, March 2022. https:\/\/www.frontiersin.org\/articles\/10.3389\/fgene.2022.869719\/abstract.<\/p>\n\n\n\n

43.<\/strong> Aydin O, Passaro AP, Raman R, Spellicy SE, Weinberg RP, Kamm RD, Sample M, Truskey GA, Zartman J<\/strong>, Dar RD, Palacios S, Wang J, Tordoff J, Montserrat N, Bashir R, Saif MTA, Weiss R. Principles for the design of multicellular engineered living systems. APL Bioengineering. American Institute of Physics; 2022 Mar 1;6(1):010903. https:\/\/doi.org\/10.1063\/5.0076635
\u2022 Selected by the Editors as a Featured Article
\u2022 Selected as a Scilight<\/p>\n\n\n\n

42. <\/strong>Huizar, F. @, \u03b4<\/sup> , Hill, H.\u03b4<\/sup> , , Bacher, E., Eckert, K., Gulotty, E., Rodriguez, K., Tucker, Z., Banerjee, M., Wiest, O.,  Zartman, J.*<\/strong> and Ashfeld, B..L. (2022), Rational Design and Identification of Harmine-Inspired, N-Heterocyclic DYRK1A Inhibitors Employing a Functional Genomic In Vivo Drosophila Model System. ChemMedChem. A. https:\/\/doi.org\/10.1002\/cmdc.202100512<\/a>.<\/p>\n\n\n\n